<p><strong>Scientists at IOCB Prague are uncovering new details of gene transcription. They have identified a previously unknown molecular mechanism by which the transcription of genetic information from deoxyribonucleic acid (DNA) into ribonucleic acid (RNA) can be initiated. The researchers focused on a specific class of molecules known as alarmones, which are found in cells across a wide range of organisms and whose levels often increase under conditions of cellular stress. The results were published in the prestigious scientific journal </strong><i><strong>Nature Chemical Biology</strong></i><strong>.</strong></p><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_bc2bfffa6c.jpg" alt="IOCB Prague/Tomáš Belloň: Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription: Dr. Hana Cahová, head of the Chemical Biology of Nucleic Acids research group." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_bc2bfffa6c.jpg 234w," sizes="100vw" width="2000" height="1335"></p><div><p>Molecules of ribonucleic acid can carry a variety of chemical modifications at one end, known as caps. In eukaryotic organisms, including human cells, the best-known cap plays an important role in RNA stability and in regulating its subsequent fate. In recent years, however, it has become clear that alternative, non-canonical RNA caps also exist, although their formation and the mechanisms by which they are attached to RNA remain only partially understood. These include alarmone caps, formed by dinucleoside polyphosphate molecules, that protect cellular RNA at moments when the cell is under threat.</p><p>In their study,<strong> </strong><a target="_blank" rel="noopener noreferrer" href="https://cahova.group.uochb.cz/en"><strong>Dr. Hana Cahová</strong></a> and colleagues examined bacterial RNA polymerase and investigated how this enzyme can initiate transcription using dinucleoside polyphosphates (NpNs) instead of the standard RNA building blocks. For the first time, the scientists described, at the atomic level, how RNA bearing an alarmone cap can be generated directly at the initiation of gene transcription. They also observed that NpNs bind through a different type of base pairing than is typically observed.</p><p>The work was significantly shaped by <strong>Valentina Serianni from Hana Cahová’s team</strong>, who demonstrated the ability of dinucleoside polyphosphates to initiate gene transcription, and by <strong>Jana Škerlová</strong>, who focused on the structural analysis of RNA polymerase. Using cryogenic electron microscopy data, she showed how dinucleoside polyphosphate molecules bind within the active site of RNA polymerase – that is, the core of the enzyme where genetic information is transcribed. Together, their findings help to elucidate the processes that accompany the transcription of genetic information from DNA to RNA.</p><p>Hana Cahová adds: <i>“We’re describing something that truly occurs in cells and that we’re now able to observe directly at the level of individual molecules. This allows us to answer fundamental questions about cellular processes, such as how cells adapt to stress. RNA plays a central role in this, as it carries the cascade of information underlying any cellular response – for example, to threatening conditions caused by nutrient deprivation or temperature shock.”</i></p><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_2_0fe88ff9e9.jpg" alt="IOCB Prague/Tomáš Belloň: Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription: Dr. Tomáš Kouba, head of the Cryogenic Electron Microscopy core facility." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_2_0fe88ff9e9.jpg 234w," sizes="100vw" width="2000" height="1335"></p><div><p>Cryogenic electron microscopy (cryo-EM) was central to the project. This part of the work was led by<strong> Dr. Tomáš Kouba</strong>, one of the authors of the study. <i>“Cryogenic electron microscopy allows us to freeze biological molecules in a state very close to their natural form and then determine their three-dimensional structure. This makes it possible to look directly into the active centers of enzymes and observe their function down to the atomic level,”</i> he explains.</p><p>Last year, IOCB Prague opened a new <a target="_blank" rel="noopener noreferrer" href="https://cryoem.group.uochb.cz/en"><strong>cryo-EM center</strong></a><strong> </strong>that is unique within the Czech research environment. State-of-the-art cryogenic electron microscopes are housed in a specially designed building and enable the study of biological processes with exceptional structural precision.</p><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_3_4d881e7a58.jpg" alt="IOCB Prague: Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription: This work shows how NpnNs initiate bacterial transcription. Cryo-EM reveals how nucleobases pair with the template: one in canonical and one in reverse Watson–Crick mode, providing a structural basis for their function as non-canonical RNA caps." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_3_4d881e7a58.jpg 245w," sizes="100vw" width="2000" height="1077"></p><blockquote><h4><strong>The Original article</strong></h4><h4><a target="_blank" rel="noopener noreferrer" href="https://www.nature.com/articles/s41589-025-02134-5"><strong>Molecular insight into 5′ RNA capping with Np<sub>n</sub>Ns by bacterial RNA polymerase</strong></a></h4><p>Valentina M. Serianni, Jana Škerlová, Anna Knopp Dubánková, Anton Škríba, Hana Šváchová, Tereza Vučková, Anatolij Filimoněnko, Milan Fábry, Pavlína Řezáčová, Tomáš Kouba &amp; Hana Cahova&nbsp;</p><p>Nat. Chem. Biol. 21 (2026)</p><p><a target="_blank" rel="noopener noreferrer" href="https://doi.org/10.1038/s41589-025-02134-5">https://doi.org/10.1038/s41589-025-02134-5</a></p><h6>licensed under <a target="_blank" rel="noopener noreferrer" href="https://creativecommons.org/licenses/by/4.0/"><strong>CC-BY 4.0</strong></a></h6></blockquote><h4><strong>Abstract</strong></h4><p>RNA capped with dinucleoside polyphosphates has been discovered in bacteria and eukaryotes only recently. The likely mechanism of this specific capping involves direct incorporation of dinucleoside polyphosphates by RNA polymerase as noncanonical initiating nucleotides. However, how these compounds bind into the active site of RNA polymerase during transcription initiation is unknown. Here, we explored transcription initiation in vitro, using a series of DNA templates in combination with dinucleoside polyphosphates and model RNA polymerase from <i>Thermus</i> <i>thermophilus</i>. We observed that the transcription start site can vary on the basis of the compatibility of the specific template and dinucleoside polyphosphate. Cryo-electron microscopy structures of transcription initiation complexes with dinucleoside polyphosphates revealed that both nucleobase moieties can pair with the DNA template. The first encoded nucleotide pairs in a canonical Watson–Crick manner, whereas the second nucleobase pairs noncanonically in a reverse Watson–Crick manner. Our work provides a structural explanation of how dinucleoside polyphosphates initiate RNA transcription.</p></div></div>

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

<p><strong>In the week from February 9, the following webinars await you in the field of atomic and molecular spectroscopy and spectrometry</strong></p><blockquote><h4><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinars"><strong>👉 DETAILS AND REGISTRATION IN THE WEBINARS SECTION</strong></a></h4><p><strong>👉 Search and filter in the largest global database</strong> with over <strong>5 000 GC, LC, MS and spectroscopy webinars</strong>.</p></blockquote><h5><strong>1. Thermo Fisher Scientific: Process Raman – A Reliable and Versatile Tool for Downstream Process Monitoring and Control for mAb Production</strong></h5><ul><li>Tu, 10.2.2026 16:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5808">Registration</a></li></ul><p>The presentation highlights how process Raman spectroscopy offers several advantages over traditional in-line UV-Vis analysis for process monitoring and metabolite production control.</p><h5><strong>2. Bruker: Meet Compact-Q DEER Spectrometer – Your Gateway to Quantum Innovation</strong></h5><ul><li>Tu, 10.2.2026 17:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5757">Registration</a></li></ul><p>Discover how the Compact-Q DEER spectrometer enables high-fidelity qubit characterization and control, combining advanced microwave architecture, AWGs, and cryogen-free operation.</p><h5><strong>3. Agilent Technologies: Novel Advancements in Trace Level Determination and Long-Term Stability of Metals in TMAH and UPW Matrices</strong></h5><ul><li>Tu, 10.2.2026 21:30 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/3733">Registration</a></li></ul><p>Explore novel approaches for trace-level metal determination and long-term stability assessment in TMAH and ultrapure water matrices.</p><h5><strong>4. AZoM: From First to Best – Introducing the Litesizer DIF Series</strong></h5><ul><li>We, 11.2.2026 15:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5765">Registration</a></li></ul><p>Join this live webinar introducing the new Litesizer DIF series of laser diffraction particle size analyzers.</p><h5><strong>5. Anton Paar: Polymer Rheology – Rotational and Transient Measurements on a Polymer Melt</strong></h5><ul><li>We, 11.2.2026 18:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5786">Registration</a></li></ul><p>Learn how rotational and transient viscosity measurements on rotational rheometers reveal polymer melt flow behavior, from method setup and accessories to data interpretation.</p><h5><strong>6. Milestone: Practical Guidance to Improve the Journey from Sample to Heavy Metals Analysis for Environmental Labs</strong></h5><ul><li>Th, 12.2.2026 16:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5803">Registration</a></li></ul><p>Improve heavy metals analysis in environmental laboratories with practical tips on reagents, filtration, cleaning, and workflow optimization to enhance data quality and efficiency.</p><h5><strong>7. Agilent Technologies: Moving from R&amp;D and Limited QC on a UV-Vis-NIR Instrument to Large-Scale QC Using an Autosampler</strong></h5><ul><li>Th, 12.2.2026 20:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/2104">Registration</a></li></ul><p>This presentation covers key aspects of adding and using an autosampler to maximize UV-Vis-NIR QC workflows when scaling from R&amp;D to routine quality control.</p>

Webinars LabRulezICPMS Week 07/2026

<p><strong>LA-ICP-MS imaging, particularly in TOF mode, provides rapid, high-resolution elemental maps of complex geological materials, but quantitative accuracy is often limited by heterogeneous mineralogy. This study introduces a workflow using UMAP for unsupervised dimensionality reduction combined with k-means clustering to segment mineral phases directly from per-pixel elemental data.</strong></p><p>Cluster compositions are matched to known minerals based on stoichiometry, allowing phase-specific normalization and reducing quantification errors by up to 60%. Validated on dawsonite-bearing sandstones, the approach enables consistent phase-resolved geochemical comparisons across depth profiles and establishes UMAP as a practical tool for accurate, interpretable multielement imaging.</p><blockquote><h4><strong>The original article</strong></h4><h4><a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/10.1021/acs.analchem.5c05398"><strong>Mineral Phase-Resolved Quantification in LA-ICP-MS Imaging</strong></a></h4><p>Barbara Umfahrer, Jakub Buday, Pavel Pořízka, Jozef Kaiser, Paolo S. Garofalo*, and Detlef Günther*</p><p>Anal. Chem. 2026, 98, 1, 581–589</p><p><a target="_blank" rel="noopener noreferrer" href="https://doi.org/10.1021/acs.analchem.5c05398">https://doi.org/10.1021/acs.analchem.5c05398</a></p><h6>licensed under <a target="_blank" rel="noopener noreferrer" href="https://creativecommons.org/licenses/by/4.0/"><strong>CC-BY 4.0</strong></a></h6></blockquote><p><strong>Selected sections from the article follow. Formats and hyperlinks were adapted from the original.</strong></p><p>Since its introduction in 1985, <a href="javascript:void(0);">(1)</a> Laser Ablation-Inductively Coupled Plasma-Mass Spectrometry (LA-ICP-MS) has matured into a routine technique for both qualitative and quantitative elemental analysis, finding use in diverse fields such as geology, <a href="javascript:void(0);">(2−4)</a> biology, <a href="javascript:void(0);">(5,6)</a> materials science, <a href="javascript:void(0);">(7)</a> and cultural heritage. <a href="javascript:void(0);">(8,9)</a> Especially in comparison to liquid analysis techniques, the method excels through minimal sample preparation, negligible sample destruction, and low limits of detection, which enable trace element analysis. However, besides the availability of standard reference materials, a longstanding challenge of quantitative LA-ICP-MS is the need for a suitable internal standard to account for variations in ablation rate and transport efficiency, as well as instrumental drift. <a href="javascript:void(0);">(10)</a> Developed for applications in geological matrices, this requirement was elegantly circumvented by Liu et al. <a href="javascript:void(0);">(11)</a> through 100 wt % normalization, which assumes that all detected elements form oxides summing up to 100 wt %. This approach was conceptually inspired by the summed-spectrum normalization calibration procedure introduced by Leach and Hieftje in 2000, which emphasized the use of total signal intensities for robust internal standardization. <a href="javascript:void(0);">(12)</a> The 100 wt % normalization strategy was subsequently extended to the bulk analysis of carbonates. <a href="javascript:void(0);">(13)</a></p><p>Concurrently, the advent of time-of-flight (TOF) mass analyzers and the development of fast-washout laser ablation cells <a href="javascript:void(0);">(14−16)</a> have transformed LA-ICP-MS into a powerful imaging tool, capable of generating spatial maps across a variety of sample matrices at high data acquisition rates. <a href="javascript:void(0);">(17−19)</a> Furthermore, in comparison to, e.g., X-ray fluorescence spectroscopy (XRF) or Scanning Electron Microscopy with Energy-Dispersive X-ray Spectroscopy (SEM-EDS), LA-ICP-MS offers a high depth resolution of approximately 0.2 μm on glass, enabling precise measurement of fine-scale structures not only laterally but also in depth. <a href="javascript:void(0);">(18)</a> However, as the volume and complexity of these elemental images have grown according to the progressive advancement of the method itself, now consisting of gigabytes of data produced within minutes, manual data interpretation has become increasingly impractical. To uncover meaningful details and patterns, researchers have applied multivariate methods such as Principal Component Analysis (PCA) and k-means clustering to reduce dimensionality and delineate distinct regions within the images. <a href="javascript:void(0);">(20−23)</a> The nonlinear dimensionality reduction technique Uniform Manifold Approximation and Projection (UMAP), <a href="javascript:void(0);">(24)</a> which supports data interpretation with its capability to capture and separate subtle local structures, has first been employed to LA-ICP-MS bulk analysis data in 2024, where it was used to classify pyrite samples and discriminate between Pb and Zn deposit types. <a href="javascript:void(0);">(25,26)</a> In combination with elemental imaging, UMAP has recently been applied to biological tissue data sets as an exploratory analysis tool, <a href="javascript:void(0);">(27)</a> further enhancing the ability to visualize and interpret complex elemental distributions.</p><p>Despite these advances, no existing approach combines the unsupervised segmentation of mineral phases by UMAP with phase-specific normalization. In this study, we introduce a UMAP-driven workflow that (1) automatically segments distinct mineralogical phases within fine-grained geological matrices and (2) applies phase-specific 100 wt % normalization (e.g., oxide <a href="javascript:void(0);">(11)</a> or carbonate <a href="javascript:void(0);">(13)</a>), thereby improving quantification accuracy and enabling phase-specific quantitative interpretation of mineral distributions in complex matrices.</p><h4><strong>Materials and Methods</strong></h4><h5><strong>LA-ICP-TOFMS Imaging</strong></h5><p>LA-ICP-TOFMS analyses were performed using a 193 nm ArF excimer laser (GeoLas C, Lambda Physik, Göttingen, Germany) coupled to an ICP-TOFMS instrument (icpTOF 2R, TOFWERK AG, Thun, Switzerland). Ablation was conducted in the modified parallel flow ablation cell (MPFAC) <a href="javascript:void(0);">(16,34)</a> under a He atmosphere (99.999%, Linde Gas Schweiz AG, Dagmersellen, Switzerland) with Ar (99.996%, Linde Gas Schweiz AG) used as the carrier gas. A piezoelectrically driven xyz translational stage (1 nm resolution, SmarAct GmbH, Oldenburg, Germany) enabled precise sample positioning. Laser, stage movement, and ICP-TOFMS data acquisition were synchronized using a custom-built imaging control system. <a href="javascript:void(0);">(19)</a> The system was optimized each day based on maximum sensitivity while ensuring a <sup>238</sup>U<sup>+</sup>/<sup>232</sup>Th<sup>+</sup> intensity ratio of 1.0 to 1.1 on NIST SRM 610 and a <sup>232</sup>Th<sup>16</sup>O<sup>+</sup>/<sup>232</sup>Th<sup>+</sup> rate of below 0.5%.</p><h5><strong>LIBS Imaging</strong></h5><p>The LIBS analyses were performed on a Firefly system (Lightigo, Czech Republic). The laser (1064 nm, 5 mJ, pulse duration ∼10 ns, diameter 6 mm, operating at 50 Hz) was focused on the sample with a singlet lens (focal length 50 mm) to a 30 μm spot. The spatial resolution of the acquired elemental maps, with a size of about 16 mm × 26 mm, was 20 μm. Plasma radiation is collected by a multifiber configuration with a collimator and an optical fiber (400 μm core diameter), which delivered the light to several Czerny–Turner spectrometers (resolution 0.25–0.4 nm). The spectral range of the spectrometers is 180–850 nm. The radiation is collected 1.5 μs after ablation, with a gate width of 15 μs.</p><p>Data processing was done with Python 3.11.8 in the Spyder environment and included background correction and per-pixel z-score normalization.</p><h4><strong>Results and Discussion</strong></h4><h5><strong>LIBS and XRD Measurements</strong></h5><p>To assess whether carbonate-based normalization <a href="javascript:void(0);">(13)</a> is warranted, first, large-scale LIBS elemental intensity maps of the samples across about a third of the thin sections were acquired. <a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/10.1021/acs.analchem.5c05398#fig1">Figure 1</a> reveals the results for “Layer 2” of the Poggio del Gatto sandstone for selected elements. A complete mapping of all four thin sections can be found in <a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/suppl/10.1021/acs.analchem.5c05398/suppl_file/ac5c05398_si_001.pdf">Figures S3 and S6</a> in the Supporting Information. The maps reveal that C is strongly enriched in fracture veins as well as in finer-grained domains within the matrix and correlates with Ca, indicating carbonate minerals rather than oxides. Bulk XRD analysis identifies calcite alongside quartz, plagioclase, white mica, and kaolinite. These complementary observations confirm calcite as a major phase and thus justify the need for performing the 100 wt % normalization on a carbonate basis for pixels representing calcite.</p><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Anal_Chem_2026_98_1_581_589_Figure_1_LIBS_elemental_intensity_maps_of_the_data_set_from_Layer_2_of_the_Poggio_del_Gatto_sandstone_mounted_on_a_microscope_slide_73ada1b7b8.jpg" alt="Anal. Chem. 2026, 98, 1, 581–589: Figure 1. LIBS elemental intensity maps of the data set from “Layer 2” of the Poggio del Gatto sandstone mounted on a microscope slide, depicting calcite veins and fine-grained structures within the matrix, underlining the need for carbonate-based normalization for specific pixels. Emission lines for evaluation are shown in the corresponding subfigure title. The epoxy used to fix the thin section on the slide is visible along the margin." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Anal_Chem_2026_98_1_581_589_Figure_1_LIBS_elemental_intensity_maps_of_the_data_set_from_Layer_2_of_the_Poggio_del_Gatto_sandstone_mounted_on_a_microscope_slide_73ada1b7b8.jpg 245w," sizes="100vw" width="2088" height="414"></p><h5><strong>Renormalization Based on Carbonates</strong></h5><p>Applying an oxide-based normalization to carbonate samples will introduce composition-dependent biases that cannot immediately be generalized as a singular numerical value. The difference between the molecular masses of carbonate CO<sub>3</sub><sup>2–</sup> and its oxide equivalent O<sup>2–</sup> yields an intrinsic bias on the order of a factor of about two, depending on the stoichiometry. Once this data is renormalized to a total of 100 wt %, the magnitude of the error becomes highly dependent on the specific elemental composition of the sample. An exemplary calculation illustrating this effect for a representative calcite pixel is provided in <a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/suppl/10.1021/acs.analchem.5c05398/suppl_file/ac5c05398_si_001.pdf">Table S2</a>, yielding a relative error of 79%. In practice, this error varies across the image according to the local phase composition. <a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/10.1021/acs.analchem.5c05398#fig6">Figure 6</a> illustrates the impact of normalization approaches for layer 2 of the samples as well as the spatial distribution of the resulting relative error. The figure presents Ca and Si elemental maps in two rows, while the first three columns compare different normalization strategies: normalization based on all oxides, normalization based on all carbonates, and a pixel-wise normalization guided by mineral phase identification, as outlined in the workflow proposed in this study. The final column displays the relative error between the bulk oxide- or carbonate-based normalization and the pixel-wise, phase-informed normalization.</p><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Anal_Chem_2026_98_1_581_589_Figure_6_Comparison_of_normalization_strategies_for_Ca_and_Si_LA_ICP_TOFMS_elemental_maps_in_Layer_2_ce3a0c1a5c.jpg" alt="Anal. Chem. 2026, 98, 1, 581–589: Figure 6. Comparison of normalization strategies for Ca and Si LA-ICP-TOFMS elemental maps in “Layer 2” of the Poggio del Gatto sandstone. Rows show Ca (top) and Si (bottom); columns compare (1) oxide-based normalization, (2) carbonate-based normalization, (3) pixel-wise, phase-informed normalization (this study), and (4) relative error between the first two and the phase-informed approach." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Anal_Chem_2026_98_1_581_589_Figure_6_Comparison_of_normalization_strategies_for_Ca_and_Si_LA_ICP_TOFMS_elemental_maps_in_Layer_2_ce3a0c1a5c.jpg 202w," sizes="100vw" width="2088" height="1622"></p><p>For Ca (in this matrix primarily associated with calcite, a dominant carbonate phase in our samples), the relative error depicted quantifies the effect of applying oxide-based normalization across the entire image. This results in a systematic overestimation of the Ca concentration by approximately 60%. Conversely, for Si─in this matrix found mainly in quartz and various plagioclase phases─the error is shown for applying carbonate-based normalization across an oxidic matrix. In such cases, the Si concentrations are underestimated by roughly 10% to 40%, depending on the mineral phase.</p><p>These findings highlight that using a single normalization scheme across heterogeneous samples introduces substantial quantification errors. To mitigate this, the pixel-wise phase segmentation enabled by the proposed UMAP-based workflow offers a significant advantage, especially in fine-grained matrices. In short, phase-aware, pixel-wise normalization combines the strengths of both normalization approaches and proves to be highly beneficial.</p><h4><strong>Conclusion</strong></h4><p>This study demonstrates that phase-specific normalization, guided by unsupervised phase segmentation of LA-ICP-MS images, can substantially improve the accuracy of elemental quantification in fine-grained geological matrices. Rather than relying on a single global assumption (e.g., all oxides or all carbonates), the workflow adapts normalization to the actual mineralogy, minimizing systematic errors and enabling phase-resolved geochemical interpretation.</p><p>The segmentation step, based on UMAP embedding and <i>k</i>-means clustering, is fully unsupervised. However, the subsequent matching of clusters to specific minerals still relies on a limited set of preidentified stoichiometries and is therefore not yet fully unsupervised. Expansion to larger stoichiometric databases could help overcome this limitation and move toward automated mineral classification. A key challenge remains the similarity of cation ratios in certain mineral groups, which may still require complementary data to ensure robust assignments.</p><p>Overall, beyond the specific case of the Poggio del Gatto sandstone presented in this study, this work provides a framework for quantitative elemental imaging of complex geological samples and is readily transferable to other contexts that require spatially resolved composition-aware normalization. This contribution adds a practical implementation to a growing literature that already uses multivariate statistics to unlock the immense information depth of LA-ICP-TOFMS.</p>

Mineral Phase-Resolved Quantification in LA-ICP-MS Imaging

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The Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences (IOCB Prague) is a leading scientific institution in the Czech Republic, recognized internationally. Its primary mission is basic research in the fields of chemical biology and medicinal chemistry, organic and material oriented chemistry, chemistry of natural compounds, biochemistry and molecular biology, physical chemistry, theoretical chemistry, and analytical chemistry. 

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<p><strong>As we all know, the need for efficient and sustainable energy storage solutions has never been greater. With the increasing demand for electric vehicles, and storage of renewable energy, the battery industry together with academic institutes are constantly evolving and pushing the boundaries of what is possible.</strong></p><p>Bruker is at the forefront of this innovation, providing cutting-edge technologies and solutions for battery research and manufacturing. In this webinar, we will explore the latest developments in Bruker's technology and how they can be applied to optimize battery performance, reduce costs, and accelerate the path towards a cleaner energy future.</p><p>Join our 75 minutes experts discussion as they dive into the fascinating world of batteries and discover how Bruker is shaping the future of it.</p><p><strong>Key Learning Topics:</strong></p><ul><li>You will learn about a complete portfolio of technologies applied to battery research and production, including AFM, NMR, EPR, MS, FTIR, XRD, XRF, XRM, RAMAN, EDS and EBSD. These technologies represent the excellence of Bruker's analytical tools and are complementary in their applications. They are used in various ways to help researchers and manufacturers understand how batteries work, how they can be improved, and how they can be produced and recycled more efficiently.</li></ul><p><strong>Who Should Attend?</strong></p><ul><li>Battery manufacturers</li><li>Research and development organizations</li><li>Academic institutions</li><li>Material science organizations</li><li>Electrochemical and analytical chemistry organizations</li><li>Testing laboratories involved in battery research and development.</li><li>Government agencies involved in renewable energy and sustainability.</li><li>Investors interested in the battery market.</li><li>Battery technology experts and engineers</li></ul><blockquote><p><strong>Presenter: </strong>Andrea Steck Ph.D. (Principal Scientist - Bruker BioSpin (Ettlingen, Germany))</p><p>Andrea Steck joined BBIO Germany in 2010 to perform contract services, then stepped into food profiling development, acted as Quality Manager (ISO-17025), and now is responsible for supporting, developing, and driving AIC-DEV projects as Principal Scientist.</p><p>Andrea holds a PhD in Chemistry (TU Munich). She gained extensive experience in NMR pulse sequence development and structure elucidation (Berne, Switzerland), and in leading an analytical (NMR/MS/IR) laboratory in big pharmaceutical industry (Vienna, Austria). She then joined Bruker Austria as Manager Pursuant to Trade Law, responsible for contract services and customer acquisition.</p><p><strong>Presenter: </strong>Hugues Guérault (Application Manager – Bruker Advanced X-Ray Solutions (Karlsruhe, Germany))</p><p>Hugues Guérault joined Bruker in 2002 as Application Scientist. He is now leading Bruker AXS application team and manages worldwide the activities of the application laboratories for equipment demonstrations and customer training.</p><p>Hugues holds a PhD in Material Science from Le Mans University (France) and made a post-doc at the University of Leuven (Belgium). Overall, he has acquired more than 25 years of experience in material characterization using X-ray diffraction.</p><p><strong>Presenter: </strong>Peter De Wolf, PhD (Sr. Director AFM Technology Development &amp; Applications, Bruker Nano Surfaces &amp; Metrology, Santa Barbara, CA, USA)</p><p>Joined Bruker after obtaining Ph.D. in Electrical Engineering from the University Leuven &amp; IMEC, Belgium in 1998 focused on the development of novel AFM characterization methods. Author and co-author of over 40 publications related to property characterization using AFM, and co-inventor of several AFM methods. In his role, Peter is responsible for developing, driving, and leveraging new technology and applications for Bruker’s AFM Instrumentation.</p><p><strong>Presenter: </strong>Ph.D. Bob Galvin, FRSC (Vice President BAMS, Bruker Daltonics, London, UK)</p><p>Bob Galvin obtained his PhD using mass spectrometry to investigate novel catalytic reactions and since then has always been involved in this technology. &nbsp;He joined Bruker eleven years ago and has held a number of executive positions during this period.</p><p><strong>Presenter: </strong>Rebecca Keller (Scientific Content Creator – Bruker Scientific LLC (Billerica, MA, USA))</p><p>Rebecca joined Bruker Scientific in 2022 to support scientific content creation for applied markets as well as research and academia. Thanks to her extensive experience in crafting content for chemistry e-learning platforms, she excels at presenting complex ideas with exceptional clarity and precision.</p><p>Rebecca graduated in Chemistry at the University of Oregon in 2019 and has since sought to improve scientific communication by producing content across multiple platforms.</p><p><strong>Presenter: </strong>Michele Gironda (Head of Global Segment Management – Bruker Nano Analytics (Berlin, Germany))</p><p>Michele Gironda joined Bruker in 2017 when Bruker acquired XGLab where he was Director Sales and Marketing. He is now our Head of Global Market Segment Management in the Nano Analytics Division. In his role Michele manages worldwide activities for the key strategic market segments in cooperation with sales, marketing, application and product managers.</p><p>Michele holds a Master Degree in Engineering obtained with his studies in Politecnico di Milano (Italy) and Universitat Politecnica de la Catalunya in Barcelona (Spain).</p></blockquote>

Bruker: Shaping the future of batteries: Bruker technologies across the entire value chain

Shaping the future of batteries: Bruker technologies across the entire value chain

Join our 75 minutes experts discussion as they dive into the fascinating world of batteries and discover how Bruker is shaping the future of it.

Bruker technologies - Shaping future of batteries

<p><strong>Telling stories and sharing information is a deeply rooted necessity of the human nature. Before the invention of written language, stories were told and preserved in the memory of people. However, with growing societies the necessity to note down not only thoughts and stories but also information aroused, resulting in the independent development of writing in different locations: the first, and most reknown was invented more than 5000 years ago in Mesopotamia, but independent from this also in other regions such as Egypt before c. 3250 BC, China before 1250 BC and Mesoamerica before c. 1 AD.&nbsp;</strong></p><p>Since the development of the first written language, stories and information could be preserved on a material-based medium. From inscriptions in cuneiforms (clay tokens), bone, stone, or metal to ink applied on papyri in Egypt 3000 BC and later parchment and, finally, paper – the materials used to preserve the written information changed over time. Due to their lower costs, papyri and parchment allowed a more widespread use of writing. Earliest inks are based on carbon blacks, for example soot ink, sometimes modified with metal salts to increase drying properties, and from c. 3rd century BC iron gall ink or tannin-based inks.&nbsp;</p><p>Spatially resolved micro-XRF is a well-established technique for the analysis of manuscripts, as it allows for non-invasive characterisation of the writing material used. However, for materials such as carbon black inks, XRF does not provide any information. Here, additional techniques are required for identifying the material. Combining elemental information as retrieved by XRF with near infrared (NIR) transmission properties allows to identify the most important inks non-invasively.</p><p>This webinar will introduce possibilities of the analysis of writing inks with spatially resolved micro-XRF and presents recent solutions to co-register NIR transmission properties for determination of the ink’s nature.</p><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Bruker_Fig_1_Fragment_with_iron_gall_ink_writing_misaligned_to_the_focal_plane_of_the_XRF_measurement_81c959a387.jpg" alt="Bruker: Fig. 1 Fragment with iron gall ink writing misaligned to the focal plane of the XRF measurement. Using the patented Aperture Management System (AMS), even misaligned writings, for example from a book page, can be mapped in a legible degree." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Bruker_Fig_1_Fragment_with_iron_gall_ink_writing_misaligned_to_the_focal_plane_of_the_XRF_measurement_81c959a387.jpg 245w," sizes="100vw" width="1370" height="536"></p><p><img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Bruker_Fig_2_M6_JETSTREAM_Special_Engineering_allowing_to_obtain_stitched_images_of_the_sample_both_in_visible_light_and_near_infrared_NIR_The_sample_is_illuminated_at_940_nm_f318ad635b.jpg" alt="Bruker: Fig. 2 M6 JETSTREAM Special Engineering allowing to obtain stitched images of the sample both in visible light and near infrared (NIR). The sample is illuminated at 940 nm." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Bruker_Fig_2_M6_JETSTREAM_Special_Engineering_allowing_to_obtain_stitched_images_of_the_sample_both_in_visible_light_and_near_infrared_NIR_The_sample_is_illuminated_at_940_nm_f318ad635b.jpg 245w," sizes="100vw" width="594" height="245"></p><p><strong>Who should attend?</strong></p><ul><li>Everyone interested in or using XRF and NIR as a qualitative analysis technique for manuscript analyis.</li><li>Cultural Heritage Scientists, Paper conservators, Researchers for manuscript analysis.</li><li>M4 TORNADO, M6 JETSTREAM, CRONO, ELIO and IRIS users</li></ul><p><strong>Can't Attend the Live Webinar?</strong></p><ul><li>Don't worry if you can't attend the live webinar - Register anyway and we will send you the webinar recording and slides shortly after the webinar broadcast.</li></ul><blockquote><p><strong>Presenter: </strong>Dr. Roald Tagle (Global Manager Application Science, Bruker AXS)</p><p><strong>Presenter: </strong>Mareike Gerken (Application Scientist, Bruker AXS)</p></blockquote>

Bruker: Conserving knowledge: Non-invasive manuscript analysis by means of micro-XRF and hyperspectral imaging

Conserving knowledge: Non-invasive manuscript analysis by means of micro-XRF and hyperspectral imaging

Learn how spatially resolved micro-XRF and NIR transmission co-registration help identify ink types in manuscript analysis.

Non-invasive Analysis of Manuscripts via µXRF & HSI

<p><strong>Join us for an insightful online seminar where BRUKER and RETSCH will explore comprehensive QC solutions for food and feed production. Discover the benefits and applications of two complementary, non-destructive technologies: Near Infrared (FT-NIR) and X-ray Fluorescence (XRF) spectroscopy. These technologies enable precise quantitative analysis of organic and inorganic constituents. Learn how to achieve accurate and reproducible results through proper sampling, sample size reduction, and preparation.</strong></p><p>Our experts will guide you through the entire QC process, sharing valuable tips and tricks for various applications and materials. Discover how FT-NIR and XRF spectrocopy using our TANGO and S2 PUMA systems can enhance your quality control processes.</p><p>Don't miss the opportunity to get your questions answered during our interactive Q&amp;A session.</p><p><strong>Who Should Attend?</strong></p><ul><li>QA Managers</li><li>Head of Laboratories</li><li>Lab Technician</li><li>Plant Manager</li><li>Researchers</li></ul><blockquote><p><strong>Presenter: </strong>Gerhard Beckers (Product Manager, RETSCH)</p><p><strong>Presenter:&nbsp;</strong>Dr. Adrian Fiege (Product Manager XRF, Bruker AXS)</p><p><strong>Presenter:&nbsp;</strong>Dr. Andreas Niemöller (Food Analysis Solutions Manager, Bruker Optics)</p></blockquote>

Bruker: Enhancing Quality Control in Food and Feed Production

Enhancing Quality Control in Food and Feed Production

Join us for an insightful online seminar where BRUKER and RETSCH will explore comprehensive QC solutions for food and feed production.

<div><div container-id="cq-colctrl-lt0" comp-id="A1"><div><p><strong>We are pleased to invite you to upcoming Webinar on "Exploring analytical methods &amp; applications in polymer science." This event is free to attend will cover key techniques such as Rheology, FTIR, NIR, Process Raman, XRF, XRD, and TGA, highlighting their roles in understanding polymer properties and optimizing processes.</strong></p><p>Join to learn how these methods can enhance material design, quality control, and performance. Gain insights into the latest advancements and applications in polymer science.</p><h3><strong>Webinar Schedule</strong></h3><h4><strong>Day 1: Introduction to analytical methods</strong></h4><p>Tuesday, September 30, 2025, | 10:00-11:15 UTC+1 &nbsp;&nbsp;</p><h5><strong>Session 1: Basics of polymer rheology</strong></h5><ul><li>Speaker: Dr. Fabian Meyer</li></ul><p>In this session, Dr. Fabian Meyer will introduce the fundamental concepts of polymer rheology. Rheology is the study of the flow and deformation of matter, which is crucial in understanding material properties and behaviour during processing. Dr. Meyer will cover:</p><ul><li>Key rheological properties and their measurement</li><li>Applications in various industries</li><li>Practical examples and case studies to illustrate the concepts</li></ul><h5><strong>Session 2: Basics of FTIR, NIR and Raman Spectroscopy/Applications</strong></h5><ul><li>Speaker: Mr. Shailesh Karavadra</li></ul><p>Mr. Shailesh Karavadra will guide you through the basics of Fourier Transform Infrared (FTIR), Near-Infrared (NIR), and Raman Spectroscopy. These techniques are essential for material characterization and identification. The session will include:</p><ul><li>Introduction to FTIR, NIR, and Raman Spectroscopy</li><li>How these techniques work and their differences</li><li>Applications in Polymers, plastics and recycling</li></ul><h5><strong>Session 3: Basics of XRF and XRD Applications</strong></h5><ul><li>Speaker: Dr. Simon Welzmiller</li></ul><p>Dr. Welzmiller will present an overview of X-ray Fluorescence (XRF) and X-ray Diffraction (XRD) techniques. These methods are widely used for elemental analysis and crystallographic studies. The session will cover:</p><ul><li>Fundamental principles of XRF and XRD</li><li>How these techniques are applied in material science and engineering</li><li>Examples of real-world applications and data interpretation</li></ul><blockquote><p><strong>Presenter: </strong>Meyer, Fabian (Teamleiter Applikation Lab, Production Process and Analytics)</p><p><strong>Presenter: </strong>Karavadra, Shaileshkumar N. (Sr Manager, Sales Development/Product Specialists Chemical Analysis Division)</p><p><strong>Presenter: </strong>Welzmiller, Simon (Global Application Specialist XRD, Production Process and Analytics)</p></blockquote></div></div></div>

Thermo Fisher Scientific: Advanced analytical methods in polymer science webinar series

Advanced analytical methods in polymer science, Part 1

Join a free webinar on polymer science. Explore rheology, FTIR, NIR, Raman, XRF, and XRD to boost material analysis, quality, and performance.

<div><div container-id="cq-colctrl-lt0" comp-id="A1"><div><p><strong>We are pleased to invite you to upcoming Webinar on "Exploring analytical methods &amp; applications in polymer science." This event is free to attend will cover key techniques such as Rheology, FTIR, NIR, Process Raman, XRF, XRD, and TGA, highlighting their roles in understanding polymer properties and optimizing processes.</strong></p><p>Join to learn how these methods can enhance material design, quality control, and performance. Gain insights into the latest advancements and applications in polymer science.</p><h3><strong>Webinar Schedule</strong></h3><h4><strong>Day 2: Novel applications of material characterization in polymer industry</strong></h4><p>Wednesday, October 1, 2025, | 10:00-11:00 UTC+1&nbsp;</p><h5><strong>Session 1: Plastics/Polymers sorting using vibrational spectroscopy&nbsp;</strong></h5><ul><li><strong>Speaker:</strong> Dr. Hilmar Geitlinger</li></ul><p>Dr. Hilmar Geitlinger will kick off the day with a presentation on advanced methods for sorting plastics and polymers. This session will explore the latest technologies used to efficiently and accurately sort different types of polymers, which is crucial for recycling and manufacturing processes. Dr. Geitlinger will discuss the principles behind these sorting techniques and their practical applications in industry.</p><h5><strong>Session 2: Multilayer/Inclusions in polymers and food packaging using IR/Raman microscopy</strong></h5><ul><li><strong>Speaker:</strong> Dr. Alexander Boehm</li></ul><p>Following Dr. Geitlinger, Dr. Alexander Boehm will present on the characterization of multilayer structures and inclusions within polymers. This session will cover the challenges and solutions associated with analyzing complex polymer systems that contain multiple layers or embedded inclusions. Dr. Boehm will highlight the importance of these analyses in ensuring the quality and performance of polymer products.</p><h5><strong>Session 3: Marine Waste Extrusion</strong></h5><ul><li><strong>Speaker:</strong> Dr. Annika Voelp</li></ul><p>The final session of the day will be led by Dr. Annika Voelp, who will discuss the extrusion of marine waste into usable polymer materials. This innovative approach addresses the growing issue of marine pollution by converting waste into valuable resources. Dr. Voelp will share insights into the extrusion process, the types of marine waste that can be utilized, and the potential applications of the resulting materials.</p><p>We look forward to your participation and hope you find these sessions informative and inspiring. Let's embark on this journey to explore the cutting-edge advancements in material characterization within the polymer industry.</p><blockquote><p><strong>Presenter: </strong>Geitlinger, Hilmar (Application Specialist, Spectroscopy)</p><p><strong>Presenter: </strong>Boehm, Alexander (Application Specialist, Spectroscopy)</p><p><strong>Presenter: </strong>Voelp, Annika (Application Specialist, Production Process and Analytics)</p></blockquote></div></div></div>

Advanced analytical methods in polymer science, Part 2

Join Day 2 of our polymer science webinar to explore plastic sorting, multilayer polymer analysis, and marine waste extrusion with spectroscopy experts.

<div><div container-id="cq-colctrl-lt0" comp-id="A1"><div><p><strong>We are pleased to invite you to upcoming Webinar on "Exploring analytical methods &amp; applications in polymer science." This event is free to attend will cover key techniques such as Rheology, FTIR, NIR, Process Raman, XRF, XRD, and TGA, highlighting their roles in understanding polymer properties and optimizing processes.</strong></p><p>Join to learn how these methods can enhance material design, quality control, and performance. Gain insights into the latest advancements and applications in polymer science.</p><h3><strong>Webinar Schedule</strong></h3><h4><strong>Day 3: Hyphenated techniques</strong></h4><p>Thursday, October 2, 2025, | 10:00-11:15 UTC+1 &nbsp; &nbsp;</p><h5><strong>Session 1: Combining Rheometry &amp; Raman-Spectroscopy for simultaneous analysis</strong></h5><ul><li><strong>Speaker:</strong> Dr. Fabian Meyer and Dr. Maximilian Ries</li></ul><p>In this session, Dr. Meyer and Dr. Ries will introduce Rheo-Raman spectroscopy, a powerful technique that combines rheology and Raman spectroscopy. Rheo-Raman allows for the simultaneous measurement of the mechanical properties and molecular structure of materials under deformation. This technique is particularly useful for studying polymers, gels, and other complex fluids. The presenters will discuss the principles behind Rheo-Raman, its instrumentation, and its applications in material science.</p><h5><strong>Session 2: Polymer Extrusion Assisted by Raman Spectroscopy</strong></h5><ul><li><strong>Speaker:</strong> Mr. Shailesh Karavadra</li></ul><p>Mr. Karavadra will present on the integration of Raman spectroscopy with polymer extrusion processes. This hyphenated technique enables real-time monitoring of the molecular composition and structural changes of polymers during extrusion. By coupling Raman spectroscopy with extrusion, researchers can optimize processing conditions and improve the quality of polymer products. The session will cover the setup, benefits, and case studies demonstrating the effectiveness of this approach.</p><h5><strong>Session 3: Thermal Gravimetric Analysis Coupled with Infrared Spectroscopy</strong></h5><ul><li><strong>Speaker:</strong> Dr. Hilmar Geitlinger</li></ul><p>Dr. Geitlinger will explore the combination of Thermal Gravimetric Analysis (TGA) with Infrared (IR) spectroscopy. TGA measures the change in weight of a sample as it is heated, providing insights into thermal stability and composition. When coupled with IR spectroscopy, it allows for the identification of evolved gases and decomposition products. This session will highlight the advantages of TGA-IR, its applications in material characterization, and practical examples from research and industry.</p><blockquote><p><strong>Presenter: </strong>Meyer, Fabian (Teamleiter Applikation Lab, Production Process and Analytics)</p><p><strong>Presenter: </strong>Ries, Maximilian (Business Development Manager EMEA, Spectroscopy)</p><p><strong>Presenter: </strong>Geitlinger, Hilmar (Application Specialist, Spectroscopy)</p><p><strong>Presenter:&nbsp;</strong>Karavadra, Shaileshkumar N. (Sr Manager, Sales Development/Product Specialists, Chemical Analysis Division)</p></blockquote></div></div></div>

Advanced analytical methods in polymer science, Part 3

Join Day 3 of our polymer science webinar to discover Rheo-Raman, Raman-assisted extrusion, and TGA-IR techniques for advanced polymer characterization.

ICPMS webinars focusing on NIR Spectroscopy - page 1