Scientists at IOCB Prague are uncovering new details of gene transcription. They have identified a previously unknown molecular mechanism by which the transcription of genetic information from deoxyribonucleic acid (DNA) into ribonucleic acid (RNA) can be initiated. The researchers focused on a specific class of molecules known as alarmones, which are found in cells across a wide range of organisms and whose levels often increase under conditions of cellular stress. The results were published in the prestigious scientific journal Nature Chemical Biology.<img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_bc2bfffa6c.jpg" alt="IOCB Prague/Tomáš Belloň: Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription: Dr. Hana Cahová, head of the Chemical Biology of Nucleic Acids research group." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_bc2bfffa6c.jpg 234w," sizes="100vw" width="2000" height="1335"><div>Molecules of ribonucleic acid can carry a variety of chemical modifications at one end, known as caps. In eukaryotic organisms, including human cells, the best-known cap plays an important role in RNA stability and in regulating its subsequent fate. In recent years, however, it has become clear that alternative, non-canonical RNA caps also exist, although their formation and the mechanisms by which they are attached to RNA remain only partially understood. These include alarmone caps, formed by dinucleoside polyphosphate molecules, that protect cellular RNA at moments when the cell is under threat.In their study, <a target="_blank" rel="noopener noreferrer" href="https://cahova.group.uochb.cz/en">Dr. Hana Cahová</a> and colleagues examined bacterial RNA polymerase and investigated how this enzyme can initiate transcription using dinucleoside polyphosphates (NpNs) instead of the standard RNA building blocks. For the first time, the scientists described, at the atomic level, how RNA bearing an alarmone cap can be generated directly at the initiation of gene transcription. They also observed that NpNs bind through a different type of base pairing than is typically observed.The work was significantly shaped by Valentina Serianni from Hana Cahová’s team, who demonstrated the ability of dinucleoside polyphosphates to initiate gene transcription, and by Jana Škerlová, who focused on the structural analysis of RNA polymerase. Using cryogenic electron microscopy data, she showed how dinucleoside polyphosphate molecules bind within the active site of RNA polymerase – that is, the core of the enzyme where genetic information is transcribed. Together, their findings help to elucidate the processes that accompany the transcription of genetic information from DNA to RNA.Hana Cahová adds: “We’re describing something that truly occurs in cells and that we’re now able to observe directly at the level of individual molecules. This allows us to answer fundamental questions about cellular processes, such as how cells adapt to stress. RNA plays a central role in this, as it carries the cascade of information underlying any cellular response – for example, to threatening conditions caused by nutrient deprivation or temperature shock.”<img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_2_0fe88ff9e9.jpg" alt="IOCB Prague/Tomáš Belloň: Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription: Dr. Tomáš Kouba, head of the Cryogenic Electron Microscopy core facility." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_2_0fe88ff9e9.jpg 234w," sizes="100vw" width="2000" height="1335"><div>Cryogenic electron microscopy (cryo-EM) was central to the project. This part of the work was led by Dr. Tomáš Kouba, one of the authors of the study. “Cryogenic electron microscopy allows us to freeze biological molecules in a state very close to their natural form and then determine their three-dimensional structure. This makes it possible to look directly into the active centers of enzymes and observe their function down to the atomic level,” he explains.Last year, IOCB Prague opened a new <a target="_blank" rel="noopener noreferrer" href="https://cryoem.group.uochb.cz/en">cryo-EM center</a> that is unique within the Czech research environment. State-of-the-art cryogenic electron microscopes are housed in a specially designed building and enable the study of biological processes with exceptional structural precision.<img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_3_4d881e7a58.jpg" alt="IOCB Prague: Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription: This work shows how NpnNs initiate bacterial transcription. Cryo-EM reveals how nucleobases pair with the template: one in canonical and one in reverse Watson–Crick mode, providing a structural basis for their function as non-canonical RNA caps." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_UOCHB_Vyzkum_z_UOCHB_odhaluje_dosud_nepoznany_zpusob_prepisu_geneticke_informace_3_4d881e7a58.jpg 245w," sizes="100vw" width="2000" height="1077"><blockquote><h4>The Original article</h4><h4><a target="_blank" rel="noopener noreferrer" href="https://www.nature.com/articles/s41589-025-02134-5">Molecular insight into 5′ RNA capping with NpnNs by bacterial RNA polymerase</a></h4>Valentina M. Serianni, Jana Škerlová, Anna Knopp Dubánková, Anton Škríba, Hana Šváchová, Tereza Vučková, Anatolij Filimoněnko, Milan Fábry, Pavlína Řezáčová, Tomáš Kouba &amp; Hana Cahova&nbsp;Nat. Chem. Biol. 21 (2026)<a target="_blank" rel="noopener noreferrer" href="https://doi.org/10.1038/s41589-025-02134-5">https://doi.org/10.1038/s41589-025-02134-5</a><h6>licensed under <a target="_blank" rel="noopener noreferrer" href="https://creativecommons.org/licenses/by/4.0/">CC-BY 4.0</a></h6></blockquote><h4>Abstract</h4>RNA capped with dinucleoside polyphosphates has been discovered in bacteria and eukaryotes only recently. The likely mechanism of this specific capping involves direct incorporation of dinucleoside polyphosphates by RNA polymerase as noncanonical initiating nucleotides. However, how these compounds bind into the active site of RNA polymerase during transcription initiation is unknown. Here, we explored transcription initiation in vitro, using a series of DNA templates in combination with dinucleoside polyphosphates and model RNA polymerase from Thermus thermophilus. We observed that the transcription start site can vary on the basis of the compatibility of the specific template and dinucleoside polyphosphate. Cryo-electron microscopy structures of transcription initiation complexes with dinucleoside polyphosphates revealed that both nucleobase moieties can pair with the DNA template. The first encoded nucleotide pairs in a canonical Watson–Crick manner, whereas the second nucleobase pairs noncanonically in a reverse Watson–Crick manner. Our work provides a structural explanation of how dinucleoside polyphosphates initiate RNA transcription.</div></div>

Research from IOCB Prague reveals a previously unknown mechanism of genetic transcription

In the week from February 9, the following webinars await you in the field of atomic and molecular spectroscopy and spectrometry<blockquote><h4><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinars">👉 DETAILS AND REGISTRATION IN THE WEBINARS SECTION</a></h4>👉 Search and filter in the largest global database with over 5 000 GC, LC, MS and spectroscopy webinars.</blockquote><h5>1. Thermo Fisher Scientific: Process Raman – A Reliable and Versatile Tool for Downstream Process Monitoring and Control for mAb Production</h5><ul><li>Tu, 10.2.2026 16:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5808">Registration</a></li></ul>The presentation highlights how process Raman spectroscopy offers several advantages over traditional in-line UV-Vis analysis for process monitoring and metabolite production control.<h5>2. Bruker: Meet Compact-Q DEER Spectrometer – Your Gateway to Quantum Innovation</h5><ul><li>Tu, 10.2.2026 17:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5757">Registration</a></li></ul>Discover how the Compact-Q DEER spectrometer enables high-fidelity qubit characterization and control, combining advanced microwave architecture, AWGs, and cryogen-free operation.<h5>3. Agilent Technologies: Novel Advancements in Trace Level Determination and Long-Term Stability of Metals in TMAH and UPW Matrices</h5><ul><li>Tu, 10.2.2026 21:30 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/3733">Registration</a></li></ul>Explore novel approaches for trace-level metal determination and long-term stability assessment in TMAH and ultrapure water matrices.<h5>4. AZoM: From First to Best – Introducing the Litesizer DIF Series</h5><ul><li>We, 11.2.2026 15:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5765">Registration</a></li></ul>Join this live webinar introducing the new Litesizer DIF series of laser diffraction particle size analyzers.<h5>5. Anton Paar: Polymer Rheology – Rotational and Transient Measurements on a Polymer Melt</h5><ul><li>We, 11.2.2026 18:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5786">Registration</a></li></ul>Learn how rotational and transient viscosity measurements on rotational rheometers reveal polymer melt flow behavior, from method setup and accessories to data interpretation.<h5>6. Milestone: Practical Guidance to Improve the Journey from Sample to Heavy Metals Analysis for Environmental Labs</h5><ul><li>Th, 12.2.2026 16:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/5803">Registration</a></li></ul>Improve heavy metals analysis in environmental laboratories with practical tips on reagents, filtration, cleaning, and workflow optimization to enhance data quality and efficiency.<h5>7. Agilent Technologies: Moving from R&amp;D and Limited QC on a UV-Vis-NIR Instrument to Large-Scale QC Using an Autosampler</h5><ul><li>Th, 12.2.2026 20:00 CET</li><li><a target="_blank" rel="noopener noreferrer" href="https://icpms.labrulez.com/webinar/2104">Registration</a></li></ul>This presentation covers key aspects of adding and using an autosampler to maximize UV-Vis-NIR QC workflows when scaling from R&amp;D to routine quality control.

Webinars LabRulezICPMS Week 07/2026

LA-ICP-MS imaging, particularly in TOF mode, provides rapid, high-resolution elemental maps of complex geological materials, but quantitative accuracy is often limited by heterogeneous mineralogy. This study introduces a workflow using UMAP for unsupervised dimensionality reduction combined with k-means clustering to segment mineral phases directly from per-pixel elemental data.Cluster compositions are matched to known minerals based on stoichiometry, allowing phase-specific normalization and reducing quantification errors by up to 60%. Validated on dawsonite-bearing sandstones, the approach enables consistent phase-resolved geochemical comparisons across depth profiles and establishes UMAP as a practical tool for accurate, interpretable multielement imaging.<blockquote><h4>The original article</h4><h4><a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/10.1021/acs.analchem.5c05398">Mineral Phase-Resolved Quantification in LA-ICP-MS Imaging</a></h4>Barbara Umfahrer, Jakub Buday, Pavel Pořízka, Jozef Kaiser, Paolo S. Garofalo*, and Detlef Günther*Anal. Chem. 2026, 98, 1, 581–589<a target="_blank" rel="noopener noreferrer" href="https://doi.org/10.1021/acs.analchem.5c05398">https://doi.org/10.1021/acs.analchem.5c05398</a><h6>licensed under <a target="_blank" rel="noopener noreferrer" href="https://creativecommons.org/licenses/by/4.0/">CC-BY 4.0</a></h6></blockquote>Selected sections from the article follow. Formats and hyperlinks were adapted from the original.Since its introduction in 1985, <a href="javascript:void(0);">(1)</a> Laser Ablation-Inductively Coupled Plasma-Mass Spectrometry (LA-ICP-MS) has matured into a routine technique for both qualitative and quantitative elemental analysis, finding use in diverse fields such as geology, <a href="javascript:void(0);">(2−4)</a> biology, <a href="javascript:void(0);">(5,6)</a> materials science, <a href="javascript:void(0);">(7)</a> and cultural heritage. <a href="javascript:void(0);">(8,9)</a> Especially in comparison to liquid analysis techniques, the method excels through minimal sample preparation, negligible sample destruction, and low limits of detection, which enable trace element analysis. However, besides the availability of standard reference materials, a longstanding challenge of quantitative LA-ICP-MS is the need for a suitable internal standard to account for variations in ablation rate and transport efficiency, as well as instrumental drift. <a href="javascript:void(0);">(10)</a> Developed for applications in geological matrices, this requirement was elegantly circumvented by Liu et al. <a href="javascript:void(0);">(11)</a> through 100 wt % normalization, which assumes that all detected elements form oxides summing up to 100 wt %. This approach was conceptually inspired by the summed-spectrum normalization calibration procedure introduced by Leach and Hieftje in 2000, which emphasized the use of total signal intensities for robust internal standardization. <a href="javascript:void(0);">(12)</a> The 100 wt % normalization strategy was subsequently extended to the bulk analysis of carbonates. <a href="javascript:void(0);">(13)</a>Concurrently, the advent of time-of-flight (TOF) mass analyzers and the development of fast-washout laser ablation cells <a href="javascript:void(0);">(14−16)</a> have transformed LA-ICP-MS into a powerful imaging tool, capable of generating spatial maps across a variety of sample matrices at high data acquisition rates. <a href="javascript:void(0);">(17−19)</a> Furthermore, in comparison to, e.g., X-ray fluorescence spectroscopy (XRF) or Scanning Electron Microscopy with Energy-Dispersive X-ray Spectroscopy (SEM-EDS), LA-ICP-MS offers a high depth resolution of approximately 0.2 μm on glass, enabling precise measurement of fine-scale structures not only laterally but also in depth. <a href="javascript:void(0);">(18)</a> However, as the volume and complexity of these elemental images have grown according to the progressive advancement of the method itself, now consisting of gigabytes of data produced within minutes, manual data interpretation has become increasingly impractical. To uncover meaningful details and patterns, researchers have applied multivariate methods such as Principal Component Analysis (PCA) and k-means clustering to reduce dimensionality and delineate distinct regions within the images. <a href="javascript:void(0);">(20−23)</a> The nonlinear dimensionality reduction technique Uniform Manifold Approximation and Projection (UMAP), <a href="javascript:void(0);">(24)</a> which supports data interpretation with its capability to capture and separate subtle local structures, has first been employed to LA-ICP-MS bulk analysis data in 2024, where it was used to classify pyrite samples and discriminate between Pb and Zn deposit types. <a href="javascript:void(0);">(25,26)</a> In combination with elemental imaging, UMAP has recently been applied to biological tissue data sets as an exploratory analysis tool, <a href="javascript:void(0);">(27)</a> further enhancing the ability to visualize and interpret complex elemental distributions.Despite these advances, no existing approach combines the unsupervised segmentation of mineral phases by UMAP with phase-specific normalization. In this study, we introduce a UMAP-driven workflow that (1) automatically segments distinct mineralogical phases within fine-grained geological matrices and (2) applies phase-specific 100 wt % normalization (e.g., oxide <a href="javascript:void(0);">(11)</a> or carbonate <a href="javascript:void(0);">(13)</a>), thereby improving quantification accuracy and enabling phase-specific quantitative interpretation of mineral distributions in complex matrices.<h4>Materials and Methods</h4><h5>LA-ICP-TOFMS Imaging</h5>LA-ICP-TOFMS analyses were performed using a 193 nm ArF excimer laser (GeoLas C, Lambda Physik, Göttingen, Germany) coupled to an ICP-TOFMS instrument (icpTOF 2R, TOFWERK AG, Thun, Switzerland). Ablation was conducted in the modified parallel flow ablation cell (MPFAC) <a href="javascript:void(0);">(16,34)</a> under a He atmosphere (99.999%, Linde Gas Schweiz AG, Dagmersellen, Switzerland) with Ar (99.996%, Linde Gas Schweiz AG) used as the carrier gas. A piezoelectrically driven xyz translational stage (1 nm resolution, SmarAct GmbH, Oldenburg, Germany) enabled precise sample positioning. Laser, stage movement, and ICP-TOFMS data acquisition were synchronized using a custom-built imaging control system. <a href="javascript:void(0);">(19)</a> The system was optimized each day based on maximum sensitivity while ensuring a 238U+/232Th+ intensity ratio of 1.0 to 1.1 on NIST SRM 610 and a 232Th16O+/232Th+ rate of below 0.5%.<h5>LIBS Imaging</h5>The LIBS analyses were performed on a Firefly system (Lightigo, Czech Republic). The laser (1064 nm, 5 mJ, pulse duration ∼10 ns, diameter 6 mm, operating at 50 Hz) was focused on the sample with a singlet lens (focal length 50 mm) to a 30 μm spot. The spatial resolution of the acquired elemental maps, with a size of about 16 mm × 26 mm, was 20 μm. Plasma radiation is collected by a multifiber configuration with a collimator and an optical fiber (400 μm core diameter), which delivered the light to several Czerny–Turner spectrometers (resolution 0.25–0.4 nm). The spectral range of the spectrometers is 180–850 nm. The radiation is collected 1.5 μs after ablation, with a gate width of 15 μs.Data processing was done with Python 3.11.8 in the Spyder environment and included background correction and per-pixel z-score normalization.<h4>Results and Discussion</h4><h5>LIBS and XRD Measurements</h5>To assess whether carbonate-based normalization <a href="javascript:void(0);">(13)</a> is warranted, first, large-scale LIBS elemental intensity maps of the samples across about a third of the thin sections were acquired. <a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/10.1021/acs.analchem.5c05398#fig1">Figure 1</a> reveals the results for “Layer 2” of the Poggio del Gatto sandstone for selected elements. A complete mapping of all four thin sections can be found in <a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/suppl/10.1021/acs.analchem.5c05398/suppl_file/ac5c05398_si_001.pdf">Figures S3 and S6</a> in the Supporting Information. The maps reveal that C is strongly enriched in fracture veins as well as in finer-grained domains within the matrix and correlates with Ca, indicating carbonate minerals rather than oxides. Bulk XRD analysis identifies calcite alongside quartz, plagioclase, white mica, and kaolinite. These complementary observations confirm calcite as a major phase and thus justify the need for performing the 100 wt % normalization on a carbonate basis for pixels representing calcite.<img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Anal_Chem_2026_98_1_581_589_Figure_1_LIBS_elemental_intensity_maps_of_the_data_set_from_Layer_2_of_the_Poggio_del_Gatto_sandstone_mounted_on_a_microscope_slide_73ada1b7b8.jpg" alt="Anal. Chem. 2026, 98, 1, 581–589: Figure 1. LIBS elemental intensity maps of the data set from “Layer 2” of the Poggio del Gatto sandstone mounted on a microscope slide, depicting calcite veins and fine-grained structures within the matrix, underlining the need for carbonate-based normalization for specific pixels. Emission lines for evaluation are shown in the corresponding subfigure title. The epoxy used to fix the thin section on the slide is visible along the margin." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Anal_Chem_2026_98_1_581_589_Figure_1_LIBS_elemental_intensity_maps_of_the_data_set_from_Layer_2_of_the_Poggio_del_Gatto_sandstone_mounted_on_a_microscope_slide_73ada1b7b8.jpg 245w," sizes="100vw" width="2088" height="414"><h5>Renormalization Based on Carbonates</h5>Applying an oxide-based normalization to carbonate samples will introduce composition-dependent biases that cannot immediately be generalized as a singular numerical value. The difference between the molecular masses of carbonate CO32– and its oxide equivalent O2– yields an intrinsic bias on the order of a factor of about two, depending on the stoichiometry. Once this data is renormalized to a total of 100 wt %, the magnitude of the error becomes highly dependent on the specific elemental composition of the sample. An exemplary calculation illustrating this effect for a representative calcite pixel is provided in <a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/suppl/10.1021/acs.analchem.5c05398/suppl_file/ac5c05398_si_001.pdf">Table S2</a>, yielding a relative error of 79%. In practice, this error varies across the image according to the local phase composition. <a target="_blank" rel="noopener noreferrer" href="https://pubs.acs.org/doi/10.1021/acs.analchem.5c05398#fig6">Figure 6</a> illustrates the impact of normalization approaches for layer 2 of the samples as well as the spatial distribution of the resulting relative error. The figure presents Ca and Si elemental maps in two rows, while the first three columns compare different normalization strategies: normalization based on all oxides, normalization based on all carbonates, and a pixel-wise normalization guided by mineral phase identification, as outlined in the workflow proposed in this study. The final column displays the relative error between the bulk oxide- or carbonate-based normalization and the pixel-wise, phase-informed normalization.<img src="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/Anal_Chem_2026_98_1_581_589_Figure_6_Comparison_of_normalization_strategies_for_Ca_and_Si_LA_ICP_TOFMS_elemental_maps_in_Layer_2_ce3a0c1a5c.jpg" alt="Anal. Chem. 2026, 98, 1, 581–589: Figure 6. Comparison of normalization strategies for Ca and Si LA-ICP-TOFMS elemental maps in “Layer 2” of the Poggio del Gatto sandstone. Rows show Ca (top) and Si (bottom); columns compare (1) oxide-based normalization, (2) carbonate-based normalization, (3) pixel-wise, phase-informed normalization (this study), and (4) relative error between the first two and the phase-informed approach." srcset="https://storage.googleapis.com/labrulez-bucket-strapi-h3hsga3/thumbnail_Anal_Chem_2026_98_1_581_589_Figure_6_Comparison_of_normalization_strategies_for_Ca_and_Si_LA_ICP_TOFMS_elemental_maps_in_Layer_2_ce3a0c1a5c.jpg 202w," sizes="100vw" width="2088" height="1622">For Ca (in this matrix primarily associated with calcite, a dominant carbonate phase in our samples), the relative error depicted quantifies the effect of applying oxide-based normalization across the entire image. This results in a systematic overestimation of the Ca concentration by approximately 60%. Conversely, for Si─in this matrix found mainly in quartz and various plagioclase phases─the error is shown for applying carbonate-based normalization across an oxidic matrix. In such cases, the Si concentrations are underestimated by roughly 10% to 40%, depending on the mineral phase.These findings highlight that using a single normalization scheme across heterogeneous samples introduces substantial quantification errors. To mitigate this, the pixel-wise phase segmentation enabled by the proposed UMAP-based workflow offers a significant advantage, especially in fine-grained matrices. In short, phase-aware, pixel-wise normalization combines the strengths of both normalization approaches and proves to be highly beneficial.<h4>Conclusion</h4>This study demonstrates that phase-specific normalization, guided by unsupervised phase segmentation of LA-ICP-MS images, can substantially improve the accuracy of elemental quantification in fine-grained geological matrices. Rather than relying on a single global assumption (e.g., all oxides or all carbonates), the workflow adapts normalization to the actual mineralogy, minimizing systematic errors and enabling phase-resolved geochemical interpretation.The segmentation step, based on UMAP embedding and k-means clustering, is fully unsupervised. However, the subsequent matching of clusters to specific minerals still relies on a limited set of preidentified stoichiometries and is therefore not yet fully unsupervised. Expansion to larger stoichiometric databases could help overcome this limitation and move toward automated mineral classification. A key challenge remains the similarity of cation ratios in certain mineral groups, which may still require complementary data to ensure robust assignments.Overall, beyond the specific case of the Poggio del Gatto sandstone presented in this study, this work provides a framework for quantitative elemental imaging of complex geological samples and is readily transferable to other contexts that require spatially resolved composition-aware normalization. This contribution adds a practical implementation to a growing literature that already uses multivariate statistics to unlock the immense information depth of LA-ICP-TOFMS.

Mineral Phase-Resolved Quantification in LA-ICP-MS Imaging

Article

Webinars

Scientific article

Science and research

Video

The Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences (IOCB Prague) is a leading scientific institution in the Czech Republic, recognized internationally. Its primary mission is basic research in the fields of chemical biology and medicinal chemistry, organic and material oriented chemistry, chemistry of natural compounds, biochemistry and molecular biology, physical chemistry, theoretical chemistry, and analytical chemistry. 

Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences

Everything from the world of analytical chemistry in one place. We connect people in solving their problems. At Labrulez you will find all the necessary information easily, quickly and clearly. Stop searching and start finding.

LabRulez

Bruker

Thermo Fisher Scientific

C&EN

Characterization of geological materials, including elemental composition, chemical speciation, and phase determination, is of primary importance for assessing their natural resources as well as their exploration, beneficiation, and extraction processes for industrial needs.
X-ray techniques, including X-ray fluorescence (XRF) and X-ray diffraction (XRD), have long been essential tools in geological research. Due to the relatively quick and simple sample preparation, XRF has become the technique of choice for the analysis of rocks and minerals. New generations of XRF analyzers also permit analysis of small spots down to 0.5 mm as well as mapping of a selected area of a sample. These new possibilities open up the XRF technique to heterogeneous samples where segregations, defects, or inclusions can now be determined. Coupling these capabilities with standard-less analysis allows quantification of up to 79 elements of the periodic table on selected points or areas of the sample. On the other hand, XRD measurements of crystalline materials in combination with Rietveld refinement is widely recognized as the most powerful method for quantitative crystalline-phase analysis.
Deriving chemical and structural information from the fundamental vibrations of molecular bonds, Fourier transform infrared spectroscopy (FTIR) and Raman spectroscopy also find many applications in geosciences research, including identification of minerals and their polymorphic forms, differentiation from other organic and inorganic materials, qualitative and quantitative determination of structural incorporated molecules and defects, characterization of thermal maturity, etc.
In this presentation, several real-world geological applications using X-ray and vibrational spectroscopic techniques will be presented. The complementarity of different analytical techniques will also be discussed.
<blockquote>
Presenter: Christopher Shaffer (Business Development Manager, Thermo Fisher Scientific)
</blockquote>
<blockquote>
Chris is the Business Development Manager for the Thermo Fisher Scientific Bulk Element Analysis (BEA) Division (x-ray diffraction, x-ray fluorescence and optical emission spectroscopy). He has been with the BEA business since 2007. After graduating from college, Chris started his career at the Ferro Corporation managing an analytical laboratory, where he first learned the techniques of x-ray diffraction (XRD) and x-ray fluorescence (XRF). Chris left Ferro to join Thermo Fisher Scientific as an XRF applications specialist for North America. In 2011, he moved to Switzerland to become the product manager for the newly launched Thermo Scientific™ ARL™ Perform’X XRF. In 2013, Chris moved back to North America as Latin American business manager for the BEA group and in 2017, he moved to his current position.
</blockquote>
<blockquote>
Presenter: Rui Chen (Applications Manager, Spectroscopy, Thermo Fisher Scientific)
</blockquote>
<blockquote>
Dr. Rui Chen obtained his Ph.D. in analytical chemistry from the University of Alberta, Canada, followed by an Alberta Ingenuity Postdoctoral fellowship. Rui has extensive experience in a wide range of analytical techniques including chromatography, mass spectrometry, and vibrational spectroscopy. Currently, he is the senior manager of the applications team at Thermo Fisher Scientific supporting vibrational spectroscopy, optical emission spectroscopy, x-ray fluorescence, x-ray diffraction, extrusion, and rheology product lines.
</blockquote>

Thermo Scientific: Geological Applications Using XRF, XRD and Vibrational Spectroscopy

Geological Applications Using XRF, XRD and Vibrational Spectroscopy

Several real-world geological applications using X-ray and vibrational spectroscopic techniques.

Geological Applications Using XRF, XRD

In this 4-part session you will gain insights and understanding of what you can do in the battery industry with varied technologies. From investigating solutes and electrodes, following battery cell behavior, and in situ research on energy storage materials the Bruker Scientists are sharing a wealth of knowledge for your research.Session 1: 11:00 a.m.<h5>Powering the Future: Analytical Methods in Battery Research</h5>Chemical understanding of batteries is essential for enhancing their performance, longevity, and safety. This session will highlight the role that analytical techniques play in battery research and development. By offering deep insights into the chemical, structural, and electrochemical properties of energy storage materials, these methods enable researchers to drive innovation and solve complex challenges. We'll provide an overview of key analytical approaches, including spectroscopy, solid-state NMR, and X-ray diffraction, and discuss their applications in advancing battery technology.Session 2: 11:25 a.m.<h5>Spectroelectrochemical Setup for Probing Reactions on Electrodes and in Electrolytes</h5>Electrochemistry combined with vibrational spectroscopy provides powerful insights into electrochemical reactions and battery research through unique infrared and Raman signatures. The session will cover accessories, setup optimization, and applications like electro-oxidation of metal-organic complexes and lithium battery interface mapping.Session 3: 11:50 a.m.<h5>Advancements and Challenges of Solid-State NMR Technology for Battery Research</h5>Solid-State Nuclear magnetic resonance (NMR) is a characterization technique applied to investigate the structural changes of/in battery materials. Advanced NMR approaches can be used to track and examine ion-exchange/diffusion across interfaces, electrolyte decomposition, dendrite formation, storage behavior of an electrode etc. during or following charging/discharging in order to understand electrochemical processes and improve battery properties.Session 4: 12:15 p.m.<h5>Charge and Structure: Understanding Batteries Through X-Ray Diffraction</h5>X-ray diffraction (XRD) serves as a powerful tool for elucidating the structural properties of battery materials at the atomic scale. Modern XRD techniques can be used to understand the effects of cycling and synthesis methods on electrode stability and efficiency, ultimately guiding the development of next-generation energy storage solutions.Key Learning Objectives:<ul><li>Gain an overview of current trends in battery technology.</li><li>Understand the key components of battery chemistry and design.</li><li>Learn about future trends in battery development and energy storage.</li></ul>Who Should Attend:<ul><li>Laboratory managers</li><li>Batteries developers</li><li>Electrochemical researchers</li></ul><blockquote>Presenter: Federico Paruzzo, PhD (Academic Market Project Manager, Bruker BBIO)Presenter: Sergey Shilov, PhD (NA Product Manager, Science, Bruker Optics)Presenter: Edina Sic (Solutions Product Manager, Academic Battery Research, Bruker BioSpin Group)Presenter: Nick Rodesney (XRD Applications Scientist, Bruker)Presenter: Ann Thayer (Contributing Editor, C&amp;EN Media Group)</blockquote>

The Science of Batteries

In this 4-part session you will gain insights and understanding of what you can do in the battery industry with varied technologies.

Did you know that there are over 3,500 different grades of steel? In fact, steel is one of the world’s most innovative and essential materials.&nbsp;Carbon is a key element in steel and is added at small levels from 0.005% to 2%. The addition of carbon into stainless steels helps increase properties such as corrosion resistance, weldability, ductility, hardness and much more.&nbsp;The slightest adjustment of carbon can have consequences as simple as economic loss, or as crucial as loss of life – putting the reputation of your business on the line. Watch this educational webinar to see how carbon analysis is changing.Learning Objectives<ul><li>Confidently identify differences in grades of stainless steel</li><li>Understand how adjustments in carbon can impact the properties of steel</li><li>Gain knowledge of new technologies available to measure carbon content</li></ul><blockquote>Presenter: Jim Pasmore (President and Founder of Analytical Sales Training, Inc.)Jim Pasmore is an elemental analysis expert passionate about the advancement of scientific instrumentation. Jim has over 50 years of experience traveling worldwide to develop new and innovative products. Jim specializes in application support for handheld x-ray fluorescence (XRF), laser induced breakdown spectroscopy (LIBS), optical emission spectroscopy (OES), and raman spectroscopy.</blockquote>

Thermo Fisher Scientific: Why is Analyzing Carbon Important?

Why is Analyzing Carbon Important?

Watch this educational webinar to see how carbon analysis is changing.

As we all know, the need for efficient and sustainable energy storage solutions has never been greater. With the increasing demand for electric vehicles, and storage of renewable energy, the battery industry together with academic institutes are constantly evolving and pushing the boundaries of what is possible.Bruker is at the forefront of this innovation, providing cutting-edge technologies and solutions for battery research and manufacturing. In this webinar, we will explore the latest developments in Bruker's technology and how they can be applied to optimize battery performance, reduce costs, and accelerate the path towards a cleaner energy future.Join our 75 minutes experts discussion as they dive into the fascinating world of batteries and discover how Bruker is shaping the future of it.Key Learning Topics:<ul><li>You will learn about a complete portfolio of technologies applied to battery research and production, including AFM, NMR, EPR, MS, FTIR, XRD, XRF, XRM, RAMAN, EDS and EBSD. These technologies represent the excellence of Bruker's analytical tools and are complementary in their applications. They are used in various ways to help researchers and manufacturers understand how batteries work, how they can be improved, and how they can be produced and recycled more efficiently.</li></ul>Who Should Attend?<ul><li>Battery manufacturers</li><li>Research and development organizations</li><li>Academic institutions</li><li>Material science organizations</li><li>Electrochemical and analytical chemistry organizations</li><li>Testing laboratories involved in battery research and development.</li><li>Government agencies involved in renewable energy and sustainability.</li><li>Investors interested in the battery market.</li><li>Battery technology experts and engineers</li></ul><blockquote>Presenter: Andrea Steck Ph.D. (Principal Scientist - Bruker BioSpin (Ettlingen, Germany))Andrea Steck joined BBIO Germany in 2010 to perform contract services, then stepped into food profiling development, acted as Quality Manager (ISO-17025), and now is responsible for supporting, developing, and driving AIC-DEV projects as Principal Scientist.Andrea holds a PhD in Chemistry (TU Munich). She gained extensive experience in NMR pulse sequence development and structure elucidation (Berne, Switzerland), and in leading an analytical (NMR/MS/IR) laboratory in big pharmaceutical industry (Vienna, Austria). She then joined Bruker Austria as Manager Pursuant to Trade Law, responsible for contract services and customer acquisition.Presenter: Hugues Guérault (Application Manager – Bruker Advanced X-Ray Solutions (Karlsruhe, Germany))Hugues Guérault joined Bruker in 2002 as Application Scientist. He is now leading Bruker AXS application team and manages worldwide the activities of the application laboratories for equipment demonstrations and customer training.Hugues holds a PhD in Material Science from Le Mans University (France) and made a post-doc at the University of Leuven (Belgium). Overall, he has acquired more than 25 years of experience in material characterization using X-ray diffraction.Presenter: Peter De Wolf, PhD (Sr. Director AFM Technology Development &amp; Applications, Bruker Nano Surfaces &amp; Metrology, Santa Barbara, CA, USA)Joined Bruker after obtaining Ph.D. in Electrical Engineering from the University Leuven &amp; IMEC, Belgium in 1998 focused on the development of novel AFM characterization methods. Author and co-author of over 40 publications related to property characterization using AFM, and co-inventor of several AFM methods. In his role, Peter is responsible for developing, driving, and leveraging new technology and applications for Bruker’s AFM Instrumentation.Presenter: Ph.D. Bob Galvin, FRSC (Vice President BAMS, Bruker Daltonics, London, UK)Bob Galvin obtained his PhD using mass spectrometry to investigate novel catalytic reactions and since then has always been involved in this technology. &nbsp;He joined Bruker eleven years ago and has held a number of executive positions during this period.Presenter: Rebecca Keller (Scientific Content Creator – Bruker Scientific LLC (Billerica, MA, USA))Rebecca joined Bruker Scientific in 2022 to support scientific content creation for applied markets as well as research and academia. Thanks to her extensive experience in crafting content for chemistry e-learning platforms, she excels at presenting complex ideas with exceptional clarity and precision.Rebecca graduated in Chemistry at the University of Oregon in 2019 and has since sought to improve scientific communication by producing content across multiple platforms.Presenter: Michele Gironda (Head of Global Segment Management – Bruker Nano Analytics (Berlin, Germany))Michele Gironda joined Bruker in 2017 when Bruker acquired XGLab where he was Director Sales and Marketing. He is now our Head of Global Market Segment Management in the Nano Analytics Division. In his role Michele manages worldwide activities for the key strategic market segments in cooperation with sales, marketing, application and product managers.Michele holds a Master Degree in Engineering obtained with his studies in Politecnico di Milano (Italy) and Universitat Politecnica de la Catalunya in Barcelona (Spain).</blockquote>

Bruker: Shaping the future of batteries: Bruker technologies across the entire value chain

Shaping the future of batteries: Bruker technologies across the entire value chain

Join our 75 minutes experts discussion as they dive into the fascinating world of batteries and discover how Bruker is shaping the future of it.

Bruker technologies - Shaping future of batteries

<div><div container-id="cq-colctrl-lt0" comp-id="A1"><div>We are pleased to invite you to upcoming Webinar on "Exploring analytical methods &amp; applications in polymer science." This event is free to attend will cover key techniques such as Rheology, FTIR, NIR, Process Raman, XRF, XRD, and TGA, highlighting their roles in understanding polymer properties and optimizing processes.Join to learn how these methods can enhance material design, quality control, and performance. Gain insights into the latest advancements and applications in polymer science.<h3>Webinar Schedule</h3><h4>Day 1: Introduction to analytical methods</h4>Tuesday, September 30, 2025, | 10:00-11:15 UTC+1 &nbsp;&nbsp;<h5>Session 1: Basics of polymer rheology</h5><ul><li>Speaker: Dr. Fabian Meyer</li></ul>In this session, Dr. Fabian Meyer will introduce the fundamental concepts of polymer rheology. Rheology is the study of the flow and deformation of matter, which is crucial in understanding material properties and behaviour during processing. Dr. Meyer will cover:<ul><li>Key rheological properties and their measurement</li><li>Applications in various industries</li><li>Practical examples and case studies to illustrate the concepts</li></ul><h5>Session 2: Basics of FTIR, NIR and Raman Spectroscopy/Applications</h5><ul><li>Speaker: Mr. Shailesh Karavadra</li></ul>Mr. Shailesh Karavadra will guide you through the basics of Fourier Transform Infrared (FTIR), Near-Infrared (NIR), and Raman Spectroscopy. These techniques are essential for material characterization and identification. The session will include:<ul><li>Introduction to FTIR, NIR, and Raman Spectroscopy</li><li>How these techniques work and their differences</li><li>Applications in Polymers, plastics and recycling</li></ul><h5>Session 3: Basics of XRF and XRD Applications</h5><ul><li>Speaker: Dr. Simon Welzmiller</li></ul>Dr. Welzmiller will present an overview of X-ray Fluorescence (XRF) and X-ray Diffraction (XRD) techniques. These methods are widely used for elemental analysis and crystallographic studies. The session will cover:<ul><li>Fundamental principles of XRF and XRD</li><li>How these techniques are applied in material science and engineering</li><li>Examples of real-world applications and data interpretation</li></ul><blockquote>Presenter: Meyer, Fabian (Teamleiter Applikation Lab, Production Process and Analytics)Presenter: Karavadra, Shaileshkumar N. (Sr Manager, Sales Development/Product Specialists Chemical Analysis Division)Presenter: Welzmiller, Simon (Global Application Specialist XRD, Production Process and Analytics)</blockquote></div></div></div>

Thermo Fisher Scientific: Advanced analytical methods in polymer science webinar series

Advanced analytical methods in polymer science, Part 1

Join a free webinar on polymer science. Explore rheology, FTIR, NIR, Raman, XRF, and XRD to boost material analysis, quality, and performance.

<div><div container-id="cq-colctrl-lt0" comp-id="A1"><div>In regulated pharmaceutical manufacturing, rapid and reliable raw material identification is essential for maintaining product quality and optimizing GMP workflows. In this webinar hosted by Thermo Fisher Scientific, discover how the Thermo Scientific™ IonicX™ Portable XRF Analyzer is transforming ionic salt verification directly on the manufacturing line.Delivering lab-quality elemental analysis in under 2 minutes, IonicX provides real-time PASS/FAIL results for key salts, such as NaCl, KCl, MgCl₂, CaCl₂, and NaOH, helping reduce quarantine delays, streamline material transport, and improve at-line decision-making.When paired with the TruScan™ Handheld Raman analyzer, the complementary capabilities of IonicX extend raw material verification coverage, enabling identification of ionic salts for comprehensive raw material ID and GMP compliance.<h4>In this session you will see:</h4><ul><li>A live demo of IonicX in action</li><li>How IonicX supports 21 CFR Part 11 and cGMP compliance</li><li>Integration of IQ/OQ/PQ documentation, annual certification, and safety interlocks</li><li>How portability, speed, and accuracy improve productivity</li><li>Innovative software features that strengthen data integrity and audit trails</li><li>How IonicX and TruScan together expand coverage for raw material verification</li></ul><blockquote>Presenter: Meet Linxi ChenLinxi Chen is a Field Application Scientist at Thermo Fisher Scientific, specializing in Raman PAT applications. She holds a PhD in Environmental Engineering and has over a decade of industry experience in environmental consulting and analytical instrumentation.</blockquote></div></div></div>

Thermo Fisher Scientific: The Perfect Pair for GMP Compliance: IonicX and TruScan for Raw Material Identification and Verification

The Perfect Pair for GMP Compliance: IonicX and TruScan for Raw Material Identification and Verification

Discover how IonicX Portable XRF and TruScan Raman improve GMP raw material identification with fast, compliant, at-line elemental analysis in pharmaceutical

ICPMS webinars focusing on X-ray - page 1