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Why urea may have been the gateway to life

We, 10.7.2024
| Original article from: ETH Zürich/Fabio Bergamin
Urea reacts extremely quickly under the conditions that existed when our planet was newly formed. This new insight furthers our understanding of how life on Earth might have begun.
Video placeholder
  • Photo: ETHETH Zürich / Adobe Stock / Montage: Potential witness to the origins of life: a urea dimer.
  • Video: Andrews University: Hans Jakob Wörner, "Measuring Electron Flow: From Small Molecules to Solutions"

Researchers from ETH Zurich and the University of Geneva have developed a new method that allows them to observe chemical reactions taking place in liquids at extremely high temporal resolution. This means they can examine how molecules change within just a few femtoseconds – in other words, within a few quadrillionths of a second. The method is based on earlier work done by the same group of researchers led by Hans Jakob Wörner, Professor of Physical Chemistry at ETH Zurich. That work yielded similar results for reactions that take place in gas environments.

To expand their X-ray spectroscopy observations to liquids, the researchers had to design an apparatus capable of producing a liquid jet with a diameter of less than one micrometre in a vacuum. This was essential because if the jet were any wider, it would absorb some of the X-rays used to measure it.

In brief

  • Researchers can now observe chemical reactions taking place in liquids at high temporal resolution.
  • Using their new method, the researchers studied a chemical reaction that may have led to the emergence of life on Earth.
  • The method is relevant not only in biochemistry but also for important industrial synthesis reactions.

Molecular pioneer in biochemistry

Using the new method, the researchers were able to gain insights into the processes that led to the emergence of life on Earth. Many scientists assume that urea played a pivotal role here. It is one of the simplest molecules containing both carbon and nitrogen. What’s more, it’s highly likely that urea was present even when the Earth was very young, something that was also suggested by a famous experiment done in the 1950s: American scientist Stanley Miller concocted a mixture of those gases believed to have made up the planet’s primordial atmosphere and exposed it to the conditions of a thunderstorm. This produced a series of molecules, one of which was urea.

According to current theories, the urea could have become enriched in warm puddles – commonly called primordial soup – on the then lifeless Earth. As the water in this soup evaporated, the concentration of urea increased. Through exposure to ionising radiation such as cosmic rays, it’s possible that this concentrated urea produced malonic acid over multiple synthesis steps. In turn, this may have created the building blocks of RNA and DNA.

ETH Zurich / Adobe Stock / Montage: Potential witness to the origins of life: a urea dimer.

Why this exact reaction tool place

Using their new method, the researchers from ETH Zurich and the University of Geneva investigated the first step in this long series of chemical reactions to find out how a concentrated urea solution behaves when exposed to ionising radiation.

“A whole host of important chemical and biochemical reactions take place in liquids, both in the human body and in industrial synthesis.”

Hans Jakob Wörner

It’s important to know that the urea molecules in a concentrated urea solution group themselves into pairs, or what are known as dimers. As the researchers have now been able to show, ionising radiation causes a hydrogen atom within each of these dimers to move from one urea molecule to the other. This turns one urea molecule into a protonated urea molecule, and the other into a urea radical. The latter is highly chemically reactive – so reactive, in fact, that it’s very likely to react with other molecules, thereby also forming malonic acid.

The researchers also managed to show that this transfer of a hydrogen atom happens extremely quickly, taking only around 150 femtoseconds, or 150 quadrillionths of a second. “That’s so fast that this reaction preempts all other reactions that might theoretically also take place,” Wörner says. “This explains why concentrated urea solutions produce urea radicals rather than hosting other reactions that would produce other molecules.”

ETH Zurich: Why urea may have been the gateway to life - Hans Jakob Wörner.

Reactions in liquids are highly relevant

In the future, Wörner and his colleagues want to examine the next steps that lead to the formation of malonic acid. They hope this will help them to understand the origins of life on Earth.

As for their new method, it can also generally be used to examine the precise sequence of chemical reactions in liquids. “A whole host of important chemical reactions take place in liquids – not just all biochemical processes in the human body, but also a great many chemical syntheses relevant to industry,” Wörner says. “This is why it’s so important that we have now expanded the scope of X-ray spectroscopy at high temporal resolution to include reactions in liquids.”

The researchers from ETH Zurich and the University of Geneva were assisted in this work by colleagues from Deutsches Elektronen-Synchrotron DESY in Hamburg, who performed calculations required to interpret measurement data.

Resources
  • Yin Z, Chang YP, Balčiūnas T, Shakya Y, Djorović A, Gaulier G, Fazio G, Santra R, Inhester L, Wolf JP, Wörner HJ: Femtosecond Proton Transfer in Urea Solutions Probed by X-ray Spectroscopy, Nature, 28 June 2023, doi: https://doi.org/10.1038/s41586-023-06182-6
ETH Zürich
 

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