13th Conference of Czech Mass Spectrometry together with 11th Informal proteomic meeting

Thirteenth annual Conference of the Czech Society for Mass Spectrometry will take place together with the eleventh Informal Proteomic Meeting from November 19 – November 21, 2025 in České Budějovice.

Registration

• Free on-line registration: Saturday, March 22 till Monday, November 3, 2025
• On-site registration will be available for CZK 2500.

Registration Fees

• The conference fee CZK 950 (CZK 400 for students) serves also as a membership fee for CSMS members, for members of CSBMB the conference is free of charge.
• The conference fee for non-members is CZK 2500.

Abstracts

• Abstract submission: Monday, October 13, 2025
• No abstract submission will be possible after the deadline.

Program

The invitation to give plenary lecture was accepted by prof. Alexander Makarov (Thermo Fisher Scientific GmbH), prof. Bernhard Küster (Technical University of Munich) and prof. Jana Roithová (Radboud University).

Wednesday November 19, 2025

10:00 - 18:00 Registration

12:45 - 13:45  Lunch – Canteen, Biology Centre CAS

13:45 - 14:00 Conference Opening

14:00 - 15:00 Plenary Lecture I: Prof. Alexander Makarov (Thermo Fisher Scientific) 

15:00 - 16:00 Session I 

15:00 - 15:20 WeO-01: Towards MS-guided Precision Environmental Health: the Czech node of the European Research Infrastructure for Human Exposome Research

• Elliott James Price

15:20 - 15:40 WeO-02: Optimization of microflow LC-MS method by design of experiments and its application to proteomics analysis

• Urban Jiří

15:40 - 16:00 WeO-03: Simultaneous mapping of peptides and released N-glycans by HILIC-FLD-MS for quality control of protein biopharmaceuticals

• Starovoit Mykyta

16:00 - 16:30 Coffee Break

16:30 - 16:50 Sponsor Lecture – Phenomenex

16:50 - 18:10 Session II

16:50 - 17:10 WeO-04: G-quadruplex – ligand interaction biophysics explored by native mass spectrometry and trapped ion mobility spectrometry

• Melikov Aleksandr

16:50 - 17:10 WeO-05: Insights into CyRepA2 primase-helicase-DNA interactions using structural mass spectrometry

• Smrčka Tomáš

16:50 - 17:10 WeO-06: Breaking the Unbreakable: Structural Elucidation of the Hypermodified RiPP Nostatin A by IRMPD Mass Spectrometry

• Hájek Jan

16:50 - 17:10 WeO-07: Unraveling Oligomerization-Mediated Inhibition in GGPPS by Structural Mass Spectrometry

• Portašiková Jasmína

18:10 - 18:30 Sponsor Lecture – Genetica

18:30 - 19:00 Flash Talks I

Quantification of Oxoacids of the Human Metabolome using Liquid Chromatography-Mass Spectrometry (WeS-01)

• Hebesberger Philipp

Analyses of human scent samples (WeS-02)

• Škeříková Veronika

rDUVLAESCI-MS/MSI: a novel approach for direct analysis of biological surfaces (WeS-03)

• Grepl Jakub

Investigation of phenolic compounds in grape pomace through UHPLC-ESI-MS/MS (WeS-04)

• Jágr Michal

Mass Spectral Library Network (MERLIN) To Streamline The Generation Of Public Spectral Libraries (WeS-05)

• Brigante Federico

A Comprehensive timsTOF MS/MS Spectral Library for Improving Metabolite Annotation in Non-Targeted Metabolomics (WeS-06)

• Mazumdar Aninda

19:00 - 22:0 Welcome Reception & Dinner (Canteen, live music from 19:30)

Thursday November 20, 2025

09:00 - 09:40 Workshop Pragolab

09:40 - 10:40 Session III

09:40 - 10:00 ThO-08: Low-input proteomics using the Orbitrap Astral

• Talacko Pavel

10:00 - 10:20 ThO-09: Integrated multiomics classification of triple negative breast cancer

• Bouchal Pavel

10:20 - 10:40 ThO-10: Proteomics of human breast milk

• Konik Peter

10:40 - 11:00 Sponsor Lecture – Amedis

11:00 - 11:30 Coffee Break

11:30 - 12:10 Workshop Genetica

12:10 - 13:10 Session IV

12:10 - 12:30 ThO-11: Development-dependent molecular strategies of stress adaptation in plants

• Černý Martin

12:30 - 12:50 ThO-12: Deciphering adaptive shifts in the redox proteome of wheat seedlings under drought

• Danchenko Maksym

12:50 - 13:10 ThO-13: No Mark, No Problem: Alternative Epigenetic Silencing in Algae

• Lochmanová Gabriela

13:10 - 14:00 Lunch

14:00 - 14:50 Plenární přednáška II: Prof. Bernhard Kuster (Technical University of Munich) 

14:50 - 15:40 Flash Talks II

Propionic acid boosts sensitivity in high-flow RPLC-MS proteomics compared to formic and acetic acid (ThS-07)

• Lenčo Juraj

Towards Biomarker Discovery: Multiomics analysis of Endometriosis (ThS-08)

• Oždian Tomáš

Integrated proteogenomic analysis identifies synuclein gamma as a key target of the mesenchymal stem-like subtype of triple negative breast cancer (ThS-09)

• Šimoník Jan

Human IMPs: A tool for comparing outputs of different tools for transmembrane segment predictions in the human proteome (ThS-10)

• Vít Ondřej

LC-MS/MS-based terminomics unravels role of carboxypeptidase B1 in luminal A breast cancer (ThS-11)

• Lapčík Petr

Mass spectometry in hands of experimental biology: Impaired nucleotide salvage affects de novo synthesis in Drosophila melanogaster (ThS-12)

• Sysel Jakub

Bioaccumulation of pharmaceuticals in herbivorous fish: The role of aquatic plants as a dietary source (ThS-13)

• Hinterholzová Helena

LC-HRMS for large-scale chemical exposure studies (ThS-14)

• Koudelka Štěpán

15:40 - 17:00 Poster session + Coffee Break

17:00 - 17:40 Workshop Bruker

17:40 - 18:00 Award Lecture – Prof. Josef Chmelík Prize Laureate 

18:00 - 18:20 General Assembly of the Czech Society for Mass Spectrometry (in Czech, lecture room)

18:00 - 18:20 Informal meeting of Proteomic section of CSBMB (in Czech or English, poster room)

19:00 - 22:00 Gala Dinner – Restaurace Solnice

21:00 Optional guided Walk-through historic center of České Budějovice – meet near the Samson's fountain at the main square

Friday November 21, 2025

09:00 - 09:50 Plenary Lecture III: Prof. Jana Roithová (Radboud University)

09:50 - 10:50 Session V

09:50 - 10:10 FrO-15: Per- and polyfluorinated compounds (PFAS) in wild common bream

• Grabicová Kateřina

10:10 - 10:30 FrO-16: Spatial mapping of 15N-labeled ammonia with MALDI-FTICR imaging in regenerating liver tissue: Re-directing of toxic byproduct into anabolic pathways

• Kučera Lukáš

10:30 - 10:50 FrO-17: LC-ICP-MS analysis of anti-obesity peptides and their metabolites labeled with lanthanide mass-tag

• Čechová Aneta

10:50 - 11:00 Sponsor Lecture – Shimadzu

11:00 - 11:20 Coffee break

11:20 - 11:40 Sponsor Lecture – Bruker

11:40 - 13:00 Session VI

11:40 - 12:00 FrO-18: Advancing Gut Microbiome Metabolomics: A Derivatization-Based Approach

• Stefani Tommaso

12:00 - 12:20 FrO-19: Mass Spectrometry in Drug Development: From Screening to Stability and Pharmacokinetics

• Chalupský Karel

12:20 - 12:40 FrO-20: Mass spectrometry of human body odor: Signatures of psychophysiological states

• Kyjakova Pavlina

12:40 - 13:00 FrO-21: Population-scale human chemical exposomics by automated liquid-liquid extraction coupled to gas chromatography – Orbitrap mass spectrometry

• Coufalíková Kateřina

13:00 - 13:10 Closing Remarks and Awards

13:10 - 14:00 Lunch

14:00 - 17:40 Guided Tour – Samson Brewery / Temelín Nuclear Power Plant

Sponsors

13th Conference of Czech Mass Spectrometry together with 11th Informal proteomic meeting: Sponsors GDa

13th Conference of Czech Mass Spectrometry together with 11th Informal proteomic meeting: Sponsors MDa & kDa

13th Conference of Czech Mass Spectrometry together with 11th Informal proteomic meeting: Sponsors Da

This year’s conference is supported by South Bohemian Region and the City of České Budějovice and is being organized in cooperation with Faculty of Science - University of South Bohemia and Biology Centre ASCR.

13th Conference of Czech Mass Spectrometry together with 11th Informal proteomic meeting: Supporters